Calcification calculation by Delta alkalinity

Calcification calculation by Delta alkalinity


ALK units: 2.2 µmol g (SW)-1 or 2200 µmol Kg (SW)-1

SW Density units: 1.03 gL-1

MW of CaCO3 = 100 g mol-1

 

AT = [HCO3]T + 2[CO32−]T + [B(OH)4]T + [OH]T − [H+]

 

Equation:

Delta CaCO3 µg L(SW)-1 =

Delta ALK µmol g-1 x Density of SW gL-1 x MW of CaCO3 g mol-1 x ½

(NB in bold underlined units remain after nominator denominator cancellation)

Clearly then need to Multiply by Volume of seawater (L) and normalise to time and some other factor such as surface area or weight of organism.

Research on ocean acidification and coral bleaching in Hawaii

The effects of climate change on coral reefs are well known. We know that as the climate changes, the ocean temperature is rising, and that rising temperature is leading to coral bleaching. We also know that as the carbon dioxide concentration in the atmosphere increases, the ocean is becoming more acidic, and that is reducing coral growth (as more acidic water impairs the growth of skeleton by corals).

Does rising temperature also affect coral growth, and does ocean acidification also affect coral bleaching? Well, rising temperature (beyond a certain limit) has also been irrefutably found to reduce coral growth.

Coral bleaching in Kaneohe Bay, Hawaii, 2014.

Well, rising temperature (beyond a certain limit) has also been irrefutably found to reduce coral growth. But the effects of ocean acidification on coral bleaching are less clear. In some studies, ocean acidification increases coral bleaching. However, in other studies, ocean acidification does not seem to have an impact.

The Hawaii Institute for Marine Biology in Kaneohe Bay, Oahu.

To try to clarify this problem, I performed an experiment at the Hawaii Institute of Marine Biology from November 2014 to January 2015. Collaborating with local researchers (Dr. Ruth Gates, Dr. Ross Cunning and Chris Wall), we exposed colonies of the lace coral, Pocillopora damicornis, to two levels of ocean acidification.

One of these levels (7.95 on the pH scale) will be seen in the near future whilst the other level (7.75 on the pH scale) is what the world could see towards the end of the twenty-first century, if we don’t reduce greenhouse gas emissions enough. At first there may not seem to be much between 7.95 and 7.75, however the pH scale is logarithmic (not linear), so a decrease of 0.2 pH units actually amounts to a huge increase in the level of ocean acidification.

Coral micro colonies used in the ocean acidification experiment.

After two months of exposure to these two levels, we then divided the corals at each level of ocean acidification into a further two groups: one that would experience no increase in water temperature (remaining at 24°C), and one that would experience an increase of 6°C (to a final temperature of 30°C). An increase of that level is often sufficient to cause coral bleaching.

What we wanted to know is, will coral bleaching be worse in the corals that experienced end-of-century ocean acidification, compared to those that experienced less ocean acidification? After one week of temperature exposure, corals were snap frozen, preserving their biology for later analysis in a laboratory.

Using an airbrush of the same type used by artists, we removed the thin layer of tissue from the surface of each coral fragment to collect the single-celled algae that live within the tissue. As photosynthetic organisms, these algae provide the organic molecules that the coral tissue uses for energy. It is the loss of these algal cells from coral tissues that is the cause of the whitening (bleaching) of the coral during high temperatures. Using a microscope, we counted the number of single-celled algae from the tissue of each coral, and then calculated the total number of algal cells per square centimetre of area of coral tissue. This provided a measure of coral bleaching that could be compared between all the corals in our experiment.

In statistical analyses now underway, we are examining whether there is in fact more coral bleaching in those corals exposed to high ocean acidification compared to those that experienced less ocean acidification. This information will help us to plan for the impacts of climate change on coral reefs, and will further help to focus attention on the plight of marine ecosystems in our changing planet.

No better reason could be found for this research than in September 2014, when a coral bleaching event occurred on reefs beside the Hawaii Institute for Marine Biology due to high water temperatures. Scientists and coral reef managers in Hawaii are now planning for a second bleaching event at the same location, anticipated to occur this coming summer in 2015.

Dr Catherine Kim

 

 Contact   About   Publications   Photos   Video    Blog

 

Contact

Catherine Kim     CV
XL Catlin Oceans Scholar
ARC Centre of Excellence for Coral Reef Studies
The University of Queensland Australia
Level 7, Gehrmann Labs (60)
St. Lucia, QLD 4072
+617 3365 2118
c dot kim at uq dot edu dot au
www.catherinejkim.com
fishiintheC

AboutJuly2014-Timor-Leste

Catherine hails from Virginia and completed her BSc in Science of Earth Systems concentrating in Oceanography at Cornell University.  Following graduation, she worked for Professor Drew Harvell coordinating her National Science Foundation Research Coordination Network Grant in the Ecology of Infectious Marine Disease.  She participated in seagrass wasting disease projects in the San Juan Islands, Washington and coral health and water quality surveys in Puakō, Hawai’i.  In 2013, she was also a program assistant for Cornell’s Earth and Environmental Systems Sustainability Semester based in Waimea, Hawai’i Island.

Catherine recently completed her PhD as an XL Catlin Oceans Scholar PhD student in the Coral Reef Ecosystems Lab and was fortunate to have been a part of the XL Catlin Seaview Survey global coral reef survey Indo-Pacific campaign in 2014.  Following the survey in Timor-Leste, Catherine focused her thesis work in the newly independent nation combining XL Catlin and NOAA datasets. As a former NOAA Pacific Islands Fisheries Science Center intern, she utilized XL Catlin Seaview Survey and NOAA datasets in an effort to better understand the coral reefs of Timor-Leste. She investigated questions on coral reef benthic composition, marine biodiversity of crabs and fishes, and coral health.  Hopefully, her work will contribute to in-country marine resource management at this critical point of development in Timor-Leste. In 2019, she was the Scientific Exploration Society’s Elodie Sandford Explorer Awardee investigating tara bandu customary law as a means of marine conservation in Timor-Leste. One of the main findings from her PhD research was that Timor-Leste is a climate refugium in terms of ocean warming and comparatively less impacted by the recent mass bleaching events. Her current research focuses on extending her coral ecology background in Timor-Leste to address localized impacts such as sedimentation on coral reefs and investigate land-sea conservation planning to maximize benefits to the environment and people.

Publications

Kim CJS, Roelfsema C, Dove S, Hoegh-Guldberg O (in press) The conditions of coral reefs in Timor-Leste before and after the 2016-2017 marine heatwave. Oceans 1001163. bioRxiv

Nolan MKB, Kim CJS, Hoegh-Guldberg O, Beger M (2020) The benefits of heterogeneity in spatial planning within coral reef environments. Biological Conservation D-20-00446. link

Rodriguez-Ramirez A, González-Rivero M, Beijbom O, Bailhache C, Bongaerts P, Brown K, Bryant DEP, Dalton P, Dove S, Ganase A, Kennedy EV, Kim CJS… (2020) A contemporary baseline record of the world’s coral reefs. Scientific Data. doi: 10.1038/s41597-020-00698-6. pdf

Kennedy EV, Vercelloni J, Neal B, Ambariyanto, Bryant D, Ganase A, Gartell P, Brown K, Kim CJS et al. (2020) Coral Reef Community Changes in Karimunjawa National Park, Indonesia: Assessing the Efficacy of Management in the face of Local and Global Stressors. Journal of Marine Science and Engineering. 8(760): 27. doi:10.3390/jmse8100760. pdf

González-Rivero M, Beijbom O, Rodriguez-Ramirez A, Bryant DEP, Ganase A, Gonzalez-Marrero, Herrera- Reveles A, Kennedy EV, Kim CJS… (2020) Monitoring of Coral Reefs Using Artificial Intelligence: A Feasible and Cost-Effective Approach. Remote Sensing. 12(3): 489. doi:10.3390/rs12030489. pdf

Yoshioka RM, Kim CJS, Tracy AM, Most R, Harvell CD (2016) Linking sewage pollution and water quality to spatial patterns of Porites lobata growth anomalies in Puakō, Hawai‘i.Marine Pollution Bulletin. 104: 313-321. doi:10.1016/j.marpolbul.2016.01.002. pdf

Groner ML, Burge CA, Kim CJS, Rees E, Van Alstyne KL, Yang S, Wyllie-Echeverria S, Harvell CD (2016) Plant characteristics associated with widespread variation in eelgrass wasting disease. Diseases of Aquatic Organisms 118(2): 159-168. doi:10.3354/dao02962.

Groner ML, Burge CA, Couch CS, Kim CJS, Siegmund GF, Singhal S, Smoot SC, Harvell CD, Wyllie-Echeverria S, Jarrell A, Gaydos  JK (2014) Host demography influences the prevalence and severity of seagrass wasting disease. Diseases of Aquatic Organisms 108: 165-175. doi:10.3354/dao02709

Burge CA, Kim CJS, Lyles JM, Harvell CD (2013) Special Issue Oceans and Humans Health: The Ecology of Marine Opportunists. Microbial Ecology 65(4): 869-79. doi:10.1007/s00248-013-0190-7

Other Publications

Kim CJS (in press) Coral Reef Management and Tara Bandu on Ataúro Island: an ecologist’s perspective. Timor-Leste: the Island and the World Conference Proceedings.

Kim CJS (2020) Tara Bandu in Timor-Leste. Report for the Scientific Exploration Society, Motcombe, UK. pdf

Kim CJS (2016) Coral Health and Disease in Timor-Leste. Report for the Global Change Institute, The University of Queensland, St. Lucia, QLD, Australia.

Kim CJS, Yoshioka RM, Harvell CD. (2013). Linking sewage pollution and water quality to spatial patterns of Porites growth anomalies in Puakō, HI. Report for the Puakō Community Assoc., Puakō, HI.

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Dr Matheus A. Mello-Athayde

Matheus Mello-athayde

About

Dr. Matheus is a postdoctoral research fellow at The University of Queensland (UQ, Australia). Matheus is a marine biologist that has recently completed his Ph.D. at the Coral Reef Ecosystems Laboratory (CRE lab) and ARC Centre of Excellence Coral Reef Studies at UQ, under the supervision of A/Professor Dr. Sophie Dove, Dr. Selina Ward, and Professor Dr. Ove Hoegh-Guldberg. Matheus’s Ph.D. and current research focuses on the present and future coral biology and physiology under different reef environments and the impacts of ocean warming and acidification. Matheus graduated with a double degree in science: Bachelor of Science (teaching degree, 2008) and Bachelor of Biological Science with Honours (Marine Biology Major, 2009) from Santa Cecilia University, Brazil.

Matheus is a passionate and dedicated marine biologist, wildlife and underwater photographer. He grew up snorkelling the coast of Brazil, learning to appreciate and protect the ocean’s biodiversity. Since he was a teenager, he has been involved with marine science and started to work as an Aquarist and Marine Education Officer on the largest public aquarium in South America at the time (Acqua Mundo, Brazil).

While undertaking his bachelor’s degree, he worked on different scientific projects, presenting the research outcomes at various conferences and symposiums. His work experience included biometric data acquisition and scientific identification on one of the most extensive collections of preserved sharks and rays in Brazil, at the centre of studies of Elasmobranchii, NUPEC. He contributed as a biologist on a centre of rescue and rehabilitation of marine animals at the Gremar Institute, Brazil. While at Gremar he worked on an educational outreach program funded by the Guarujá city council as a teacher for public high schools’ students. He also worked for the University of Sao Paulo as a marine educator and snorkelling guide on a marine ecology outreach project. Matheus had a passion for the zoology of invertebrates, his honours degree project focused on the ecology of rocky shore environments, which led him to start a work internship with corals reefs at the University of Sao Paulo.

In January 2011, Matheus joined the CRE laboratory where he had the opportunity to learn, design and perform field and laboratory experiments, field samples collection, data collection, statistical analyses, and statistical modelling. Matheus’s research collaborations ranged from DNA extractions to performing long term in-situ and laboratory experiments on different coral species and bioerosive sponges, with a goal to advance our knowledge on how the impact of climate change, such as increases in ocean temperature and acidification, will affect the coral reefs.

Matheus was awarded a full doctoral fellowship on a research project entitled “Porites cylindrica (Dana, 1846), a resilient coral found on the Great Barrier Reef: present and future coral physiology”. The overall aim of Matheus’s PhD thesis is to better understand how corals with different life-history respond to changes in the present and future abiotic environments. His PhD project utilized the state-of-the-art laboratory automated control system for studying the effects of ocean acidification and warming. His project was also one of the firsts to incorporate the newest automated underwater incubations system in order to measure in situ calcification and metabolic rates.

Coral growth of reciprocal transplantation colonies from different reef habitats.

The hope for the coral reefs is going beyond finding “super corals” that would be able to resist bleaching and survive stressful thermal events but find corals that also can maintain a higher percentage of coral cover, by growing rapidly upwards to counter sea level rises, maintain high recruitment levels and increase their skeletal density to prevent breakages due to the wave energy that coral reefs might be facing in the future.

Matheus Mello-athayde

Current projects and collaborations:

  1. Porites cylindrica (Dana, 1846), a resilient coral found on the Great Barrier Reef: present and future coral physiology. in collaboration with Associate Professor Sophie Dove (UQ, Australia), Professor Ove Hoegh-Guldberg, Dr Selina Ward.

Subprojects:

  • Conservative growth by hard coral exposed to variable environments.
  • Long term in-situ growth dynamics of reef-flat and reef-slope Porites cylindrica as a function of origin and reciprocal transplantation.
  • Future scenario experiment, responses of Porites cylindrica coral to future warming and acidification scenarios under different lights.
  • Responses of Porites cylindrica coral to future summer warming and acidification scenarios under different lights.
  • Porites cylindrica genetic variation between Heron Island reef habitats. in collaboration with Dr Pim Bongaerts (California Academy of Sciences, USA)
  • Importance of heterotrophic feeding for Porites cylindrica as an alternative survival strategy. 
  1. “History of thermal stress impairs calcification and expansion in branching coral”, in collaboration with Professor Amatzia Genin (The Hebrew University, The Interuniversity Institute for Marine Science in Eilat, Israel) and Dr Kristen Brown (University of Pennsylvania, USA), Dr Veronica Radice (Old Dominion University, USA) and Associate Professor Sophie Dove (UQ, Australia).
  1. “Effect of diel pH variability on acidification resilience, calcification and tissue energetics in corals with contrasting environmental pH histories”, in collaboration with Dr Kristen Brown (University of Pennsylvania, USA), Associate Professor Sophie Dove (UQ, Australia) and A. Prof. Katie Barott (University of Pennsylvania, USA).

Matheus Mello-athayde

Main Collaborators

Associate Professor Sophie Dove (The University of Queensland, Australia)

Professor Ove Hoegh-Guldberg (The University of Queensland, Australia)

Dr Selina Ward (The University of Queensland, Australia)

Dr Kristen Brown (University of Pennsylvania, USA)

Professor Amatzia Genin (The Hebrew University, The Interuniversity Institute for Marine Science in Eilat, Israel)

Dr Veronica Radice (Old Dominion University, USA)

Dr Pim Bongaerts (California Academy of Sciences, USA)

Matheus Mello-athayde

Publications

Brown KT, Mello-Athayde MA, Sampayo EM, Chai A, Dove S, Barott KL (2022) Environmental memory gained from exposure to extreme pCO2 variability promotes coral cellular acid–base homeostasis, Proceedings of the Royal Society B: Biological Sciences. https://doi.org/10.1098/rspb.2022.0941

Clark V, Mello-Athayde MA, Dove S (2022) Colonies of Acropora formosa with greater survival potential have reduced calcification rates. PLOS ONE https://doi.org/10.1371/journal.pone.0269526

Mello-Athayde MA (2021) Present and future coral physiology of the resilient coral Porites cylindrica (Dana, 1846). PhD Thesis. https://doi.org/10.14264/8f8e563

Rosic N, Rémond C, Mello-Athayde MA (2020) Differential impact of heat stress on reef-building corals under different light conditions. Mar Environ Res 158. https://doi.org/10.1016/j.marenvres.2020.104947

Fang JKH, Schönberg CHL, Mello-Athayde MA, Achlatis M, Hoegh-Guldberg O, Dove S (2018) Bleaching and mortality of a photosymbiotic bioeroding sponge under future carbon dioxide emission scenarios. Oecologia 187:25–35 https://doi.org/10.1007/s00442-018-4105-7

Fang JKH, Schönberg CHL, Mello-Athayde MA, Hoegh-Guldberg O, Dove S (2014) Effects of ocean warming and acidification on the energy budget of an excavating sponge. Glob Chang Biol 20:1043–1054 https://doi.org/10.1111/gcb.12369

Fang JKH, Mello-Athayde MA, Schönberg CHL, Kline DI, Hoegh-Guldberg O, Dove S (2013) Sponge biomass and bioerosion rates increase under ocean warming and acidification. Glob Chang Biol 19:3581–3591 https://doi.org/10.1111/gcb.12334

Athayde MAM, Borges RP (2009). Characterization of the macrobenthic community of the rocky shore of the Urubuqueçaba Island, Santos – SP (Brazil). Honours thesis – Revista Ceciliana.

Mello-Athayde MA, Hoegh-Guldberg O, Ward S, Dove S (2020) Conservative growth by hard coral exposed to variable environments. PhD thesis, in revision.

Mello-Athayde MA, Hoegh-Guldberg O, Ward S, Dove S (2020) Conservative growth by hard coral exposed to variable environments. In revision.

Mello-Athayde MA, Hoegh-Guldberg O, Ward S, Dove S (2020) Long term in-situ growth dynamics of reef-flat and reef-slope Porites cylindrica as a function of origin and reciprocal transplantation. In revision.

Mello-Athayde MA, Hoegh-Guldberg O, Ward S, Dove S (2020) Future scenario experiment, responses of Porites cylindrica coral to future warming and acidification scenarios under different lights. In revision.

Mello-Athayde MA, Hoegh-Guldberg O, Ward S, Dove S (2021) Responses of Porites cylindrica coral to future summer warming and acidification scenarios under different lights. In prep.

Mello-Athayde MA, Bongaerts P, Hoegh-Guldberg O, Ward S, Dove S (2021) Porites cylindrica genetic variation between Heron Island reef habitats. In prep.

Mello-Athayde MA, Hoegh-Guldberg O, Ward S, Dove S (2021) Importance of heterotrophic feeding for Porites cylindrica as an alternative survival strategy. In prep.

Other Publications, presentations and invited talks

Mello-Athayde MA, Ward S, Hoegh-Guldberg O, Dove S (2020) Conservative growth by hard coral exposed to variable environments: impact of reciprocal translocation between reef-flat and reef-slope. 14th International Coral Reef Symposium, Germany.

Mello-Athayde MA, Ward S, Hoegh-Guldberg O, Dove S (2018) Porites cylindrica (Dana, 1846), a resilient coral found on the Great Barrier Reef: present and future coral physiology. 91th Australian Coral Reef Society (ACRS) Conference, Exmouth, Western Australia.

Mello-Athayde MA, Ward S, Hoegh-Guldberg O, Dove S (2017) Calcification and production in two populations of Porites cylindrical (Dana, 1846): impact of reciprocal translocation. 90th Australian Coral Reef Society (ACRS) Conference, Townsville, Australia.

Mello-Athayde MA, Ward S, Hoegh-Guldberg O, Dove S (2016) Importance of heterotrophic feeding for Porites cylindrica as an alternative survival strategy. 13th International Coral Reef Symposium, Honolulu, USA.

Bongaerts P, Sampayo E, Mello-Athayde MA, Tonk L, Dove S (2012) SymbioGBR: a web-based database of Symbiodinium diversity and host associations on the Great Barrier Reef. 12th International Coral Reef Symposium, Cairns, Australia.

Maranho A, Mello-Athayde MA (2008) Monitoring, identification and quantification of sea turtle stranding in Baixada Santista, State of São Paulo in the period 2007-2008. 11° Marine Biology Symposium, Santos, Brazil.

Mello-Athayde MA, Giordano F (2006) Sea urchin as an environmental indicator- a tool to assess rocky shore ecosystems, IV Semana da Biologia Marinha e Gerenciamento Costeiro da UNESP, Sao Vicente, Brazil.

Mello-Athayde MA, Giordano F (2006) Sea urchin as an environmental indicator, IV Jornada Ceciliana de Iniciação Científica, Santos, Brazil.

Matheus Mello-athayde

Matheus Mello-athayde

Contact

Matheus A. Mello-Athayde, BSc (Hons), PhD Candidate / Research assistant – CRE lab

Curriculum Lattes

Researchgate profile

ARC Centre of Excellence for Coral Reef Studies  Link to student’s page

School of Biological Sciences, The University of Queensland, Gehrmann Laboratories (Bldg 60), Level 7, Research Rd. Brisbane, St. Lucia QLD 4072, Australia.

Ph: (+61) 7 0406 178 842 E: m.athayde@uq.edu.au / matheus.melloathayde@uqconnect.edu.au

Mr Giovanni Bernal Carrillo

Double Autobox deployment and PAM deployment at the Minireefs at Harrys Bommie, Heron Island.

Double Autobox deployment and PAM deployment at the Minireefs at Harrys Bommie, Heron Island.

Double Autobox deployment. Lilianna P.

Double Autobox deployment. Lilianna P.

Giovanni B. Working on the Autobox controller.

Giovanni B. Working on the Autobox controller.

Giovanni Bernal after cleaning the live-stream Camera.

Giovanni Bernal after cleaning the live-stream Camera.

Autobox Deployment by Lilianna P. and Giovanni B.

Autobox Deployment by Lilianna P. and Giovanni B.

Mr Siham Afatta Taruc

siham_tarucSiham begin his interest in marine science after reading a leaflet mentioning mangrove forest degradation in Indonesia, which brought him to his undergraduate study in 2001 in Diponegoro University, Indonesia. Since then he has been involved both in academic and non-academic activities related to marine conservation in Indonesia, mainly in collaborative researches and public-private partnerships.

Siham’s research is focused on the interdependence between the resilience of human systems and marine ecosystems. He is interested in applying methods that allow combining assessments of stakeholders’ perception and ecosystem condition to better guide decision-making.

In 2008, he was involved in a joint-research in Central Java, between The University of Queensland and Diponegoro University. His work provided scientific reference to Karimunjawa islands reserve managers regarding the adaptive capacity of local communities to different future scenarios of herbivorous fishing pressure affecting coral reef habitat decline.

Currently, he is undertaking his PhD study investigating the resilience and sustainability of coastal livelihoods in South Sulawesi, Indonesia. His research uses systems thinking approach and community-based system dynamics modeling to understand the social and ecological system components driving the wicked problem of the use of marine resources in Indonesia’s marine conservation priority areas.

Credentials

BSc. (Hons.) in Marine Science – Diponegoro University
MPhil. in Marine Social-ecology – The University of Queensland